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I hope this is relevant. I use Shopify, Xero and PayPal. I’m confused and likely there is an easy answer regarding reconciling an invoice.

1. A customer places an order on my Shopify ecommerce site and pays via PayPal.
2. Shopify syncs with Xero and Xero creates a paid invoice.
3. Xero then asks to reconcile this amount as PayPal is listed as a bank account. However, this has already been paid and cannot match this invoice to reconcile. What to do?
4. If I create a new invoice to reconcile, then wouldn’t this just be an extra sale?

Confused. Any help/advice greatly appreciated!